PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078936.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 329aa    MW: 36888.6 Da    PI: 8.0955
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.7e-0992116126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt++C  f + GtC+ G+ C+FaHg
  XP_011078936.1  92 YKTRICAKFTE-GTCRNGEHCTFAHG 116
                     9**********.*************8 PP

2zf-CCCH25.32.7e-08153175325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                     +++C+ ++ +  C+yGd+C+F H
  XP_011078936.1 153 MKICKKYYNGEDCPYGDKCNFLH 175
                     579******66************ PP

3zf-CCCH38.32.2e-12219244127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC+ +   G+C++G+rC+FaHg+
  XP_011078936.1 219 WKTKLCSKWEM-GQCPFGERCHFAHGQ 244
                     8**********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.3E-1588124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-889122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.19791118IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-491117IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-692116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-7149177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.15150178IPR000571Zinc finger, CCCH-type
SMARTSM003560.011150177IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5153175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-8153177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-9217248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61218245IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6218244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-15218248IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9219244IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSYPDSTPPP QSFLSPPFAG GDGGGYWPPF LMGNDHQQQQ QPDLISQFDR PPPFKRPRTN  60
EKPQNFSPFP QMNPRINPPN IPGNKGTSHI FYKTRICAKF TEGTCRNGEH CTFAHGAEDL  120
REPPPNWQEL IREKERGAGS GSWGDDQRMI HRMKICKKYY NGEDCPYGDK CNFLHERGPP  180
PLKKFKVDMP GQRESSAISI GVTGDARGSS TDFDQTAYWK TKLCSKWEMG QCPFGERCHF  240
AHGQSELKYS GTLDEAELVM NAVPVPRKAA SVSAFSTPPA NPMVAPPLNV DGEQKKTSKW  300
KLTKKINRIY ADWLDDLTPP NCSPGVEEI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078936.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
SwissprotQ9LT815e-75C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A022Q0W11e-130A0A022Q0W1_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000655851e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-66C3H family protein